| OMIM Linking Help | |
| 1.1 | Linking To Entries |
| 1.2 | Linking To Clinical Synopses |
| 1.3 | Linking To Gene Maps |
| 1.4 | Linking To Phenotypic Series |
| 1.5 | Linking Via Searches |
| 1.6 | Files Available For Linking |
| 1.1 | Linking To Entries |
|
Use the following url to link to a specific entry, in this case 300377: http://omim.org/entry/300377 Linking to a specific allelic variant is done by appending a '#' followed by the allelic variant number, in this case allelic variant 0006 in entry 134934: http://omim.org/entry/134934#0006 You can also link directly to the table of allelic variants for an entry: http://omim.org/allelicVariant/134934 You can highlight specific terms by adding the 'highlight' parameter to the url as follows: http://omim.org/entry/300377?highlight=duchenne+muscular+dystrophy Linking via a search is done as follows: http://omim.org/search?index=entry&search=duchenne+muscular+dystrophy You can set the number of entries to return with the 'limit' parameter, so to get 100 entries you would append '&limit=100'. You can set the sort order by using the 'sort' parameter. You would append '&sort=score+desc' to sort by rank, or 'sort=date_updated+desc' to sort by date updated. Note that the '+' (plus) is used to replace spaces, which is a URL requirement. |
|
| 1.2 | Linking To Clinical Synopses |
|
Use the following url to link to a specific clinical synopsis, in this case 310200: http://omim.org/clinicalSynopsis/310200 You can highlight specific terms by adding the 'highlight' parameter to the url as follows: http://omim.org/clinicalSynopsis/310200?highlight=calf+muscle+pseudohypertrophy Linking via a search is done as follows: http://omim.org/search?index=clinicalSynopsis&search=scoliosis Note that the '+' (plus) is used to replace spaces, which is a URL requirement. |
|
| 1.3 | Linking To Gene Maps |
|
Use the following url to link to a specific chromosome on the gene map, in this case chromosome 2: http://omim.org/geneMap/2 or chromosome X: http://omim.org/geneMap/X The default is to show the first 10 entries, but you can show up to 100, as follows: http://omim.org/geneMap/2?limit=100 Note that the gene map entries are sorted in ascending genomic start position order, and by symbols if multiple entries start in the same location. |
|
| 1.4 | Linking To Phenotypic Series |
|
Use the following url to link to a phenotypic series: http://omim.org/phenotypicSeries/102300 102300 is the phenotypic series for Restless legs syndrome. |
|
| 1.5 | Linking Via Searches |
|
Use the following url to link to a search, in this case a search for 'duchenne musculal dystrophy': http://omim.org/search?search=duchenne+muscular+dystrophy You can search specific fields too, in this case a search for the dbSNP rs77121243 in the dbSNP field of the allelic variants: http://omim.org/search?search=av_db_snp:rs77121243 The search defaults to searchings entries if the index is not specified. You can specify the entries index in the search by adding the 'index=entry' parameter to the url as follows: http://omim.org/search?index=entry&search=rs77121243 You can search the clinical synopses by adding the 'index=clinicalSynopsis' parameter to the url as follows: http://omim.org/search?index=clinicalSynopsis&search=autosomal+dominant Note that the '+' (plus) is used to replace spaces, which is a URL requirement. And you can search the gene map by adding the 'index=geneMap' parameter to the url as follows: http://omim.org/search?index=geneMap&search=epilepsy Searching for all gene entries containing a MIM number, in this case '209900': http://omim.org/search?index=geneMap&search=209900 Searches of arbitrary complexity can be created, the search help provides documentation on the features and fields available. |
|
| 1.6 | Files Available For Linking |
|
A field-delimited file linking MIM numbers to NCBI Gene IDs and HGNC Approved Gene Symbols is available via anonymous FTP download mim2gene.txt |
|